##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index15_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	23907063	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14970575850325	33.0	31.0	34.0	31.0	34.0
2	32.4174122099398	34.0	31.0	34.0	31.0	34.0
3	32.44829546816353	34.0	31.0	34.0	31.0	34.0
4	36.087232087019636	37.0	35.0	37.0	35.0	37.0
5	35.983012216933545	37.0	35.0	37.0	35.0	37.0
6	35.97561427767183	37.0	35.0	37.0	35.0	37.0
7	35.952763206421466	37.0	35.0	37.0	35.0	37.0
8	35.905406657438434	37.0	35.0	37.0	35.0	37.0
9	37.64534020761982	39.0	37.0	39.0	35.0	39.0
10-14	37.88154286455011	39.2	37.2	39.4	35.0	39.4
15-19	38.85049931896695	40.0	38.0	41.0	35.0	41.0
20-24	38.6918640487123	40.0	38.0	41.0	34.0	41.0
25-29	38.36700537410221	40.0	38.0	41.0	34.0	41.0
30-34	38.32114720239789	40.0	38.0	41.0	33.8	41.0
35-39	38.036414468812	40.0	37.4	41.0	33.0	41.0
40-44	37.95863416597848	40.0	37.0	41.0	33.0	41.0
45-49	37.642538985236285	39.8	36.4	41.0	32.4	41.0
50-54	37.09812716852756	39.0	35.2	41.0	31.2	41.0
55-59	36.426544674266346	38.2	35.0	40.0	30.6	41.0
60-64	35.67078717281165	36.8	34.2	40.0	29.6	41.0
65-69	34.75769034448104	35.6	33.6	39.0	28.6	40.8
70-74	33.76439395336851	35.0	33.0	37.4	27.2	39.6
75-79	32.75927996676129	34.8	31.8	36.2	26.0	38.8
80-84	32.13544935235248	35.0	32.0	35.2	25.6	37.0
85-89	31.06262557638301	34.0	31.2	35.0	23.2	36.0
90	30.13448799628796	34.0	31.0	35.0	16.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	7.0
12	102.0
13	919.0
14	4355.0
15	11535.0
16	20277.0
17	28558.0
18	36789.0
19	45203.0
20	54997.0
21	64963.0
22	76245.0
23	90243.0
24	109488.0
25	137764.0
26	178843.0
27	232251.0
28	299155.0
29	384354.0
30	485114.0
31	610861.0
32	771982.0
33	998613.0
34	1353891.0
35	1963598.0
36	3082815.0
37	4648036.0
38	5344633.0
39	2824440.0
40	47032.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.175201795378367	13.019356784660378	10.355772250717862	49.44966916924339
2	22.60268858621404	19.198573241723587	35.023009727292724	23.175728444769646
3	25.688295546801378	21.545088997339406	23.082931600590168	29.68368385526905
4	27.74573773449294	27.84332395827961	19.6100499672419	24.80088833998555
5	29.330762207087762	30.00404943599651	21.370899517309404	19.29428883960632
6	24.112167186743097	33.032346967923246	21.674820533162105	21.180665312171556
7	21.41552895895242	19.030447194621942	37.49634992805264	22.057673918372995
8	21.569809725268218	22.209256737224475	29.16317658927824	27.057756948229066
9	21.629942582240236	20.99331063794829	31.543448059680102	25.83329872013137
10-14	24.62620607140241	26.30532491590456	24.70418972000032	24.364279292692707
15-19	25.000150792257504	25.169328411440585	25.11623364191578	24.714287154386135
20-24	24.76750740983951	25.401044034559995	25.442374916567545	24.38907363903295
25-29	24.684415632111136	25.415569953728284	25.360464860443233	24.539549553717343
30-34	24.717091617609196	25.344460300207245	25.317456748660454	24.6209913335231
35-39	24.737400500989484	25.4717759735456	25.266798045720197	24.524025479744722
40-44	24.677886011234527	25.31888500335101	25.43085579307634	24.572373192338123
45-49	24.61247670325041	25.375891706130847	25.367461344087832	24.64417024653091
50-54	24.645540534833952	25.44963565501443	25.396705375412942	24.508118434738677
55-59	24.682129012977917	25.390694186258884	25.344493726106514	24.582683074656686
60-64	24.581091473245646	25.41463740081637	25.462002518504484	24.5422686074335
65-69	24.6046261336374	25.51595651567396	25.43187572010798	24.44754163058066
70-74	24.663101180337407	25.455313049321564	25.35515442690988	24.52643134343115
75-79	24.63360858602267	25.4156031671707	25.439040123978028	24.511748122828596
80-84	24.568581659165655	25.559672805509216	25.44065998399465	24.43108555133048
85-89	24.653627661509898	25.539140995948014	25.349898928539876	24.457332414002213
90	24.38590881780577	25.646755206291573	25.5430535178012	24.424282458101455
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.62487096462176
2	45.77841703098369
3	55.37197940207042
4	52.546626074478496
5	48.62505104669408
6	45.292832498914656
7	43.47320287732542
8	48.627566673497284
9	47.46324130237161
10-14	48.99048536409512
15-19	49.714437946643635
20-24	49.15658104887246
25-29	49.223965185828476
30-34	49.33808295113229
35-39	49.2614259807342
40-44	49.25025920357265
45-49	49.25664694978132
50-54	49.153658969572625
55-59	49.2648120876346
60-64	49.12336008067915
65-69	49.05216776421806
70-74	49.189532523768555
75-79	49.14535670885126
80-84	48.99966721049614
85-89	49.11096007551211
90	48.81019127590723
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	3.0
1	1.5
2	1.0
3	2.5
4	5.0
5	7.0
6	7.5
7	13.5
8	25.5
9	43.5
10	55.0
11	82.0
12	134.0
13	206.0
14	346.0
15	597.0
16	1062.5
17	1941.5
18	3420.0
19	6056.0
20	7785.0
21	10509.5
22	17656.0
23	28473.0
24	43824.5
25	65642.5
26	94048.5
27	130412.0
28	170689.5
29	213952.0
30	237756.0
31	260937.5
32	309186.5
33	363312.5
34	421785.5
35	478762.0
36	537243.0
37	601565.5
38	658424.0
39	705742.5
40	729606.0
41	745553.0
42	777213.5
43	805747.0
44	823945.5
45	832534.5
46	833315.5
47	828838.0
48	829294.0
49	830829.5
50	829861.0
51	820474.5
52	810035.5
53	797488.0
54	789108.5
55	786759.5
56	773033.0
57	754641.5
58	728639.5
59	696238.0
60	679709.0
61	659468.5
62	617414.5
63	566238.5
64	506950.0
65	448702.0
66	389237.0
67	327298.0
68	270714.0
69	217578.5
70	190231.0
71	166876.5
72	124037.5
73	88524.0
74	58855.0
75	35744.0
76	20464.0
77	10761.5
78	4938.5
79	2061.5
80	1114.0
81	773.0
82	313.0
83	138.5
84	68.5
85	38.5
86	20.0
87	16.5
88	12.0
89	4.5
90	1.0
91	2.5
92	3.0
93	1.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23443281175943698
2	0.0
3	0.0
4	0.0
5	1.2548592857265653E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	7.110869285783871E-5
30-34	0.002417695557166516
35-39	0.004902316942905115
40-44	0.007199546008641881
45-49	0.0025783175457395166
50-54	0.01640017429158906
55-59	0.0033780811971759143
60-64	7.529155714359392E-5
65-69	2.4260612857380265E-4
70-74	0.004113428738611681
75-79	0.0015710838257296598
80-84	2.4678899285955787E-4
85-89	4.868854028619074E-4
90	1.1293733571539088E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.3907063E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	56.189760921266746
#Duplication Level	Relative count
1	100.0
2	33.026373626373626
3	17.61758241758242
4	11.225274725274724
5	7.821978021978022
6	5.608791208791208
7	4.286813186813187
8	3.435164835164835
9	2.936263736263736
10++	33.82197802197802
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4970970	2.5693545	5.0800214	1
CCTGG	4989810	2.5672643	6.0680685	1
GAAGA	5138225	2.5587316	5.1459975	2
CTTCT	5223260	2.545068	5.2931504	1
AAGAA	5164620	2.514386	5.016733	2
CTGGA	4831865	2.4401457	8.314567	1
TCCAG	4685310	2.3567135	5.2835255	2
CTCCT	4636645	2.3122964	6.6866136	1
CTGGG	4388665	2.2670002	7.974609	1
CAGGA	4381985	2.223147	5.3803253	1
CTTCA	4514515	2.209862	5.400446	1
CCCAG	4238905	2.1822479	6.8523016	1
CTCCA	4355190	2.1819415	7.1859617	1
CTCTG	4081900	2.043782	6.0249815	1
CTGGC	3664525	1.8854033	5.0460806	1
TGGAA	3748810	1.85827	5.1185617	2
CTGAA	3761445	1.8571098	5.2276344	1
CTCAG	3484160	1.7525344	5.7496796	1
CTTGG	3256990	1.637273	5.1302547	1
>>END_MODULE
